Source: BEFREE

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		1.000 0.877 68 2005 2019
dbSNP: rs4392270
rs4392270 		1.000 0.120 2 112921052 downstream gene variant A/G snv 0.93
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2018 2018
dbSNP: rs325010
rs325010
AARS2 ; TMEM151B
1.000 0.120 6 44300181 3 prime UTR variant A/G snv 0.88
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2011 2011
dbSNP: rs2929973
rs2929973
CCN4
0.851 0.200 8 133230265 3 prime UTR variant G/T snv 0.85
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2019 2019
dbSNP: rs2542151
rs2542151 		0.763 0.480 18 12779948 upstream gene variant G/T snv 0.83
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2012 2012
dbSNP: rs1036199
rs1036199
HAVCR2
0.925 0.160 5 157104725 missense variant C/A snv 0.87 0.83
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.020 1.000 2 2011 2019
dbSNP: rs964184
rs964184
ZPR1
0.716 0.440 11 116778201 3 prime UTR variant G/C snv 0.82
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2013 2013
dbSNP: rs6502867
rs6502867
NLRP1
0.882 0.120 17 5517008 intron variant C/T snv 0.82
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 < 0.001 1 2013 2013
dbSNP: rs360722
rs360722
IL18
1.000 0.120 11 112155980 intron variant A/G snv 0.82
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2011 2011
dbSNP: rs1883832
rs1883832
CD40
0.581 0.680 20 46118343 5 prime UTR variant T/C snv 0.75 0.80
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.730 0.750 3 2012 2017
dbSNP: rs7574865
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.900 0.966 26 2007 2017
dbSNP: rs10181656
rs10181656
STAT4
0.763 0.360 2 191105153 intron variant G/C snv 0.79
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.820 1.000 2 2012 2017
dbSNP: rs9770242
rs9770242
NAMPT
0.851 0.240 7 106285885 5 prime UTR variant C/A snv 0.79
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2011 2011
dbSNP: rs6908425
rs6908425
CDKAL1
0.752 0.320 6 20728500 intron variant T/C snv 0.78
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2017 2017
dbSNP: rs2221903
rs2221903
IL21 ; IL21-AS1
0.752 0.360 4 122617757 intron variant C/T snv 0.77
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2017 2017
dbSNP: rs548234
rs548234
ATG5
0.763 0.360 6 106120159 intron variant C/T snv 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2011 2011
dbSNP: rs4672495
rs4672495 		0.925 0.120 2 62294109 intergenic variant G/T snv 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2017 2017
dbSNP: rs1570360
rs1570360
VEGFA
0.641 0.680 6 43770093 upstream gene variant A/G snv 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.020 1.000 2 2005 2011
dbSNP: rs3810936
rs3810936
TNFSF15
0.742 0.320 9 114790605 synonymous variant T/C snv 0.71 0.75
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2019 2019
dbSNP: rs6478109
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 < 0.001 1 2019 2019
dbSNP: rs7848647
rs7848647
TNFSF15
0.732 0.320 9 114806766 upstream gene variant T/C snv 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2019 2019
dbSNP: rs2229113
rs2229113
IL10RA
0.763 0.360 11 117998955 missense variant A/G snv 0.74 0.74
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 < 0.001 1 2017 2017
dbSNP: rs343389
rs343389
FOXJ3
1.000 0.120 1 42243181 intron variant T/A;C snv 0.73
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2013 2013
dbSNP: rs6451231
rs6451231
IL7R
1.000 0.120 5 35878825 3 prime UTR variant T/C snv 0.72
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.010 1.000 1 2019 2019
dbSNP: rs8193036
rs8193036
IL17A
0.689 0.600 6 52185695 upstream gene variant C/T snv 0.72
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.030 0.333 3 2015 2019